Alignment
| Sequences analysed in total |
54945658 |
| Single-end alignments with a unique best hit |
38538424 |
| Sequences without alignments under any condition |
5363527 |
| Sequences that did not map uniquely |
11043707 |
| Genomic sequence context not extractable (edges of chromosomes) |
16 |
Cytosine Methylation
| Total C's analysed |
340799757 |
| Methylated C's in CpG context |
9131253 |
| Methylated C's in CHG context |
3280702 |
| Methylated C's in CHH context |
10311199 |
| Methylated C's in Unknown context |
1 |
| Unmethylated C's in CpG context |
5481679 |
| Unmethylated C's in CHG context |
71285272 |
| Unmethylated C's in CHH context |
241309652 |
| Unmethylated C's in Unknown context |
51 |
| Percentage methylation (CpG context) |
62.5% |
| Percentage methylation (CHG context) |
4.4% |
| Percentage methylation (CHH context) |
4.1% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
19531089 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
19007319 |
original bottom strand |
Deduplication
| Alignments analysed |
38538408 |
| Unique alignments |
28958885 |
| Duplicates removed |
9579523 |
| Duplicated alignments were found at 6513822 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
257929130 |
| Methylated C's in CpG context |
6241643 |
| Methylated C's in CHG context |
2481088 |
| Methylated C's in CHH context |
7800367 |
| Unmethylated C's in CpG context |
3923096 |
| Unmethylated C's in CHG context |
54034280 |
| Unmethylated C's in CHH context |
183448656 |
| Percentage methylation (CpG context) |
61.4% |
| Percentage methylation (CHG context) |
4.4% |
| Percentage methylation (CHH context) |
4.1% |
M-Bias Plot
