Alignment
| Sequences analysed in total |
47321362 |
| Single-end alignments with a unique best hit |
33269648 |
| Sequences without alignments under any condition |
4983173 |
| Sequences that did not map uniquely |
9068541 |
| Genomic sequence context not extractable (edges of chromosomes) |
8 |
Cytosine Methylation
| Total C's analysed |
295249128 |
| Methylated C's in CpG context |
7123378 |
| Methylated C's in CHG context |
2769248 |
| Methylated C's in CHH context |
8779613 |
| Methylated C's in Unknown context |
6 |
| Unmethylated C's in CpG context |
5633520 |
| Unmethylated C's in CHG context |
62032993 |
| Unmethylated C's in CHH context |
208910376 |
| Unmethylated C's in Unknown context |
54 |
| Percentage methylation (CpG context) |
55.8% |
| Percentage methylation (CHG context) |
4.3% |
| Percentage methylation (CHH context) |
4.0% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
16853835 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
16415805 |
original bottom strand |
Deduplication
| Alignments analysed |
33269640 |
| Unique alignments |
26191191 |
| Duplicates removed |
7078449 |
| Duplicated alignments were found at 4865435 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
234107426 |
| Methylated C's in CpG context |
5032491 |
| Methylated C's in CHG context |
2189132 |
| Methylated C's in CHH context |
6948454 |
| Unmethylated C's in CpG context |
4233865 |
| Unmethylated C's in CHG context |
49272988 |
| Unmethylated C's in CHH context |
166430496 |
| Percentage methylation (CpG context) |
54.3% |
| Percentage methylation (CHG context) |
4.3% |
| Percentage methylation (CHH context) |
4.0% |
M-Bias Plot
