Alignment
| Sequences analysed in total |
38,145,789 |
| Single-end alignments with a unique best hit |
26,933,611 |
| Sequences without alignments under any condition |
3,844,302 |
| Sequences that did not map uniquely |
7,367,876 |
| Genomic sequence context not extractable (edges of chromosomes) |
8 |
Cytosine Methylation
| Total C's analysed |
238,792,843 |
| Methylated C's in CpG context |
3,870,942 |
| Methylated C's in CHG context |
2,074,321 |
| Methylated C's in CHH context |
6,853,578 |
| Methylated C's in Unknown context |
6 |
| Unmethylated C's in CpG context |
6,456,949 |
| Unmethylated C's in CHG context |
50,467,641 |
| Unmethylated C's in CHH context |
169,069,412 |
| Unmethylated C's in Unknown context |
43 |
| Percentage methylation (CpG context) |
37.5% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
13,644,712 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
13,288,891 |
original bottom strand |
Deduplication
| Alignments analysed |
26,933,603 |
| Unique alignments |
21,633,880 |
| Duplicates removed |
5,299,723 |
| Duplicated alignments were found at 3657323 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
193,076,545 |
| Methylated C's in CpG context |
2,615,440 |
| Methylated C's in CHG context |
1,672,010 |
| Methylated C's in CHH context |
5,536,277 |
| Unmethylated C's in CpG context |
5,034,591 |
| Unmethylated C's in CHG context |
40,870,492 |
| Unmethylated C's in CHH context |
137,347,735 |
| Percentage methylation (CpG context) |
34.2% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
