Alignment
| Sequences analysed in total |
38145789 |
| Single-end alignments with a unique best hit |
26933611 |
| Sequences without alignments under any condition |
3844302 |
| Sequences that did not map uniquely |
7367876 |
| Genomic sequence context not extractable (edges of chromosomes) |
8 |
Cytosine Methylation
| Total C's analysed |
238792843 |
| Methylated C's in CpG context |
3870942 |
| Methylated C's in CHG context |
2074321 |
| Methylated C's in CHH context |
6853578 |
| Methylated C's in Unknown context |
6 |
| Unmethylated C's in CpG context |
6456949 |
| Unmethylated C's in CHG context |
50467641 |
| Unmethylated C's in CHH context |
169069412 |
| Unmethylated C's in Unknown context |
43 |
| Percentage methylation (CpG context) |
37.5% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
13644712 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
13288891 |
original bottom strand |
Deduplication
| Alignments analysed |
26933603 |
| Unique alignments |
21633880 |
| Duplicates removed |
5299723 |
| Duplicated alignments were found at 3657323 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
193076545 |
| Methylated C's in CpG context |
2615440 |
| Methylated C's in CHG context |
1672010 |
| Methylated C's in CHH context |
5536277 |
| Unmethylated C's in CpG context |
5034591 |
| Unmethylated C's in CHG context |
40870492 |
| Unmethylated C's in CHH context |
137347735 |
| Percentage methylation (CpG context) |
34.2% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
