Alignment
| Sequences analysed in total |
43875544 |
| Single-end alignments with a unique best hit |
31109899 |
| Sequences without alignments under any condition |
4378736 |
| Sequences that did not map uniquely |
8386909 |
| Genomic sequence context not extractable (edges of chromosomes) |
4 |
Cytosine Methylation
| Total C's analysed |
275566894 |
| Methylated C's in CpG context |
6742260 |
| Methylated C's in CHG context |
2533641 |
| Methylated C's in CHH context |
8095715 |
| Methylated C's in Unknown context |
4 |
| Unmethylated C's in CpG context |
5032926 |
| Unmethylated C's in CHG context |
57763701 |
| Unmethylated C's in CHH context |
195398651 |
| Unmethylated C's in Unknown context |
49 |
| Percentage methylation (CpG context) |
57.3% |
| Percentage methylation (CHG context) |
4.2% |
| Percentage methylation (CHH context) |
4.0% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
15754450 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
15355445 |
original bottom strand |
Deduplication
| Alignments analysed |
31109895 |
| Unique alignments |
24375160 |
| Duplicates removed |
6734735 |
| Duplicated alignments were found at 4640423 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
217388885 |
| Methylated C's in CpG context |
4766121 |
| Methylated C's in CHG context |
1998598 |
| Methylated C's in CHH context |
6394758 |
| Unmethylated C's in CpG context |
3770652 |
| Unmethylated C's in CHG context |
45618093 |
| Unmethylated C's in CHH context |
154840663 |
| Percentage methylation (CpG context) |
55.8% |
| Percentage methylation (CHG context) |
4.2% |
| Percentage methylation (CHH context) |
4.0% |
M-Bias Plot
