Alignment
| Sequences analysed in total |
51218055 |
| Single-end alignments with a unique best hit |
35971688 |
| Sequences without alignments under any condition |
5352935 |
| Sequences that did not map uniquely |
9893432 |
| Genomic sequence context not extractable (edges of chromosomes) |
17 |
Cytosine Methylation
| Total C's analysed |
318609382 |
| Methylated C's in CpG context |
1949810 |
| Methylated C's in CHG context |
2704803 |
| Methylated C's in CHH context |
8995531 |
| Methylated C's in Unknown context |
5 |
| Unmethylated C's in CpG context |
11666229 |
| Unmethylated C's in CHG context |
67300839 |
| Unmethylated C's in CHH context |
225992170 |
| Unmethylated C's in Unknown context |
42 |
| Percentage methylation (CpG context) |
14.3% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.8% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
18227489 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
17744182 |
original bottom strand |
Deduplication
| Alignments analysed |
35971671 |
| Unique alignments |
28167955 |
| Duplicates removed |
7803716 |
| Duplicated alignments were found at 5323605 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
251284172 |
| Methylated C's in CpG context |
1117219 |
| Methylated C's in CHG context |
2130271 |
| Methylated C's in CHH context |
7103417 |
| Unmethylated C's in CpG context |
8704767 |
| Unmethylated C's in CHG context |
53161027 |
| Unmethylated C's in CHH context |
179067471 |
| Percentage methylation (CpG context) |
11.4% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.8% |
M-Bias Plot
