Alignment
| Sequences analysed in total |
43766122 |
| Single-end alignments with a unique best hit |
30774537 |
| Sequences without alignments under any condition |
4408793 |
| Sequences that did not map uniquely |
8582792 |
| Genomic sequence context not extractable (edges of chromosomes) |
7 |
Cytosine Methylation
| Total C's analysed |
270463093 |
| Methylated C's in CpG context |
3738428 |
| Methylated C's in CHG context |
2384340 |
| Methylated C's in CHH context |
7948821 |
| Methylated C's in Unknown context |
6 |
| Unmethylated C's in CpG context |
7710169 |
| Unmethylated C's in CHG context |
56531256 |
| Unmethylated C's in CHH context |
192150079 |
| Unmethylated C's in Unknown context |
53 |
| Percentage methylation (CpG context) |
32.7% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
4.0% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
15595058 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
15179472 |
original bottom strand |
Deduplication
| Alignments analysed |
30774530 |
| Unique alignments |
23583932 |
| Duplicates removed |
7190598 |
| Duplicated alignments were found at 4871300 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
208742100 |
| Methylated C's in CpG context |
2433264 |
| Methylated C's in CHG context |
1834116 |
| Methylated C's in CHH context |
6132504 |
| Unmethylated C's in CpG context |
5606908 |
| Unmethylated C's in CHG context |
43707226 |
| Unmethylated C's in CHH context |
149028082 |
| Percentage methylation (CpG context) |
30.3% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
4.0% |
M-Bias Plot
