Alignment
| Sequences analysed in total |
41067195 |
| Single-end alignments with a unique best hit |
28225445 |
| Sequences without alignments under any condition |
4889856 |
| Sequences that did not map uniquely |
7951894 |
| Genomic sequence context not extractable (edges of chromosomes) |
9 |
Cytosine Methylation
| Total C's analysed |
248788324 |
| Methylated C's in CpG context |
2734772 |
| Methylated C's in CHG context |
2164429 |
| Methylated C's in CHH context |
7271896 |
| Methylated C's in Unknown context |
4 |
| Unmethylated C's in CpG context |
7930762 |
| Unmethylated C's in CHG context |
52183606 |
| Unmethylated C's in CHH context |
176502859 |
| Unmethylated C's in Unknown context |
47 |
| Percentage methylation (CpG context) |
25.6% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
4.0% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
14326472 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
13898964 |
original bottom strand |
Deduplication
| Alignments analysed |
28225436 |
| Unique alignments |
21580762 |
| Duplicates removed |
6644674 |
| Duplicated alignments were found at 4431191 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
191753930 |
| Methylated C's in CpG context |
1619800 |
| Methylated C's in CHG context |
1661368 |
| Methylated C's in CHH context |
5604286 |
| Unmethylated C's in CpG context |
5820743 |
| Unmethylated C's in CHG context |
40271429 |
| Unmethylated C's in CHH context |
136776304 |
| Percentage methylation (CpG context) |
21.8% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
