Alignment
| Sequences analysed in total |
38694728 |
| Single-end alignments with a unique best hit |
26775823 |
| Sequences without alignments under any condition |
4522753 |
| Sequences that did not map uniquely |
7396152 |
| Genomic sequence context not extractable (edges of chromosomes) |
7 |
Cytosine Methylation
| Total C's analysed |
236830909 |
| Methylated C's in CpG context |
1521136 |
| Methylated C's in CHG context |
2019905 |
| Methylated C's in CHH context |
6805531 |
| Methylated C's in Unknown context |
3 |
| Unmethylated C's in CpG context |
8435386 |
| Unmethylated C's in CHG context |
49508859 |
| Unmethylated C's in CHH context |
168540092 |
| Unmethylated C's in Unknown context |
36 |
| Percentage methylation (CpG context) |
15.3% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
13563366 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
13212450 |
original bottom strand |
Deduplication
| Alignments analysed |
26775816 |
| Unique alignments |
20306675 |
| Duplicates removed |
6469141 |
| Duplicated alignments were found at 4389179 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
180906565 |
| Methylated C's in CpG context |
812836 |
| Methylated C's in CHG context |
1541274 |
| Methylated C's in CHH context |
5205510 |
| Unmethylated C's in CpG context |
6123570 |
| Unmethylated C's in CHG context |
37882671 |
| Unmethylated C's in CHH context |
129340704 |
| Percentage methylation (CpG context) |
11.7% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
