Alignment
| Sequences analysed in total |
42580713 |
| Single-end alignments with a unique best hit |
29298801 |
| Sequences without alignments under any condition |
4427565 |
| Sequences that did not map uniquely |
8854347 |
| Genomic sequence context not extractable (edges of chromosomes) |
8 |
Cytosine Methylation
| Total C's analysed |
258783988 |
| Methylated C's in CpG context |
2486910 |
| Methylated C's in CHG context |
2227062 |
| Methylated C's in CHH context |
7545918 |
| Methylated C's in Unknown context |
2 |
| Unmethylated C's in CpG context |
8412744 |
| Unmethylated C's in CHG context |
53845778 |
| Unmethylated C's in CHH context |
184265576 |
| Unmethylated C's in Unknown context |
44 |
| Percentage methylation (CpG context) |
22.8% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
3.9% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
14862071 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
14436722 |
original bottom strand |
Deduplication
| Alignments analysed |
29298793 |
| Unique alignments |
21661854 |
| Duplicates removed |
7636939 |
| Duplicated alignments were found at 5065741 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
192733908 |
| Methylated C's in CpG context |
1381716 |
| Methylated C's in CHG context |
1655628 |
| Methylated C's in CHH context |
5621688 |
| Unmethylated C's in CpG context |
5960458 |
| Unmethylated C's in CHG context |
40175798 |
| Unmethylated C's in CHH context |
137938620 |
| Percentage methylation (CpG context) |
18.8% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
