Alignment
| Sequences analysed in total |
37295107 |
| Single-end alignments with a unique best hit |
25679235 |
| Sequences without alignments under any condition |
4374229 |
| Sequences that did not map uniquely |
7241643 |
| Genomic sequence context not extractable (edges of chromosomes) |
3 |
Cytosine Methylation
| Total C's analysed |
226950434 |
| Methylated C's in CpG context |
3317024 |
| Methylated C's in CHG context |
1979125 |
| Methylated C's in CHH context |
6574055 |
| Methylated C's in Unknown context |
5 |
| Unmethylated C's in CpG context |
6495487 |
| Unmethylated C's in CHG context |
47921019 |
| Unmethylated C's in CHH context |
160663724 |
| Unmethylated C's in Unknown context |
44 |
| Percentage methylation (CpG context) |
33.8% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
3.9% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
13043896 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
12635336 |
original bottom strand |
Deduplication
| Alignments analysed |
25679232 |
| Unique alignments |
20008408 |
| Duplicates removed |
5670824 |
| Duplicated alignments were found at 3847579 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
178130878 |
| Methylated C's in CpG context |
2029861 |
| Methylated C's in CHG context |
1545657 |
| Methylated C's in CHH context |
5152668 |
| Unmethylated C's in CpG context |
4947513 |
| Unmethylated C's in CHG context |
37672021 |
| Unmethylated C's in CHH context |
126783158 |
| Percentage methylation (CpG context) |
29.1% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
3.9% |
M-Bias Plot
