Multi-Genome Alignment Report

Flow Cell ID:C8GWUANXX
Run name:160406_D00491_0342_C8GWUANXX
Cycles:50
End type:Single End
Yield (Gbases):11.76
Total sequences:235,138,491


Sequences were sampled, trimmed to 36 bases and mapped to 30 reference genomes (see list below) using Bowtie.

The reference genomes are sorted in the tables below according to how many sequences have been mapped. Sequence reads often align to multiple genomes. Each sequence is assigned to the genome with the most aligned sequences. The 'assigned' column contains the number of sequences that align to that particular genome but not also to another genome listed higher in the table, i.e. with more overall matches.

Sequences containing adapters were found by ungapped alignment using Exonerate.

Datasets: 7 |

7

Yield (Gbases):11.76
Sequences:235,138,491
Sampled:100,000

Reference IDSpecies/Reference GenomeAlignedAligned %Error rateAssignedAssigned %
mmu.mm10Mus musculus (mouse)9493194.9%0.39%9493194.9%
phix.Illumina.RTAPhi X 17414711.5%0.14%14711.5%
Other28 others1450.1%
Unmapped34533.5%
Adapter670.1%

Sample details

Sample IDSample nameGroupOwnerSequence typeEnd typeExperiment typeSpeciesControl
SLX-11269EVx2 inpSCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269E14 inpSCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269E14 K27SCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269Nx2 inpSCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269Nx2 K27SCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269EVx2 K27SCI Maike ParamorMaike ParamorDNASingle EndChIPSeqMus musculus (mouse)No
SLX-11269PhiX ControlphixDNASingle EndChIPSeqPhi X 174Yes

Reference Genomes

Sequences were aligned to the following reference genomes (30 in total)