Alignment
| Sequences analysed in total |
41293576 |
| Single-end alignments with a unique best hit |
29491281 |
| Sequences without alignments under any condition |
3255325 |
| Sequences that did not map uniquely |
8546970 |
| Genomic sequence context not extractable (edges of chromosomes) |
7 |
Cytosine Methylation
| Total C's analysed |
267197444 |
| Methylated C's in CpG context |
5762426 |
| Methylated C's in CHG context |
374598 |
| Methylated C's in CHH context |
888894 |
| Methylated C's in Unknown context |
3 |
| Unmethylated C's in CpG context |
5506907 |
| Unmethylated C's in CHG context |
57729663 |
| Unmethylated C's in CHH context |
196934956 |
| Unmethylated C's in Unknown context |
66 |
| Percentage methylation (CpG context) |
51.1% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
14965353 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
14525921 |
original bottom strand |
Deduplication
| Alignments analysed |
29491274 |
| Unique alignments |
27533935 |
| Duplicates removed |
1957339 |
| Duplicated alignments were found at 873673 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
251238475 |
| Methylated C's in CpG context |
4756156 |
| Methylated C's in CHG context |
350283 |
| Methylated C's in CHH context |
823149 |
| Unmethylated C's in CpG context |
4863676 |
| Unmethylated C's in CHG context |
54258630 |
| Unmethylated C's in CHH context |
186186581 |
| Percentage methylation (CpG context) |
49.4% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.4% |
M-Bias Plot
