Alignment
| Sequences analysed in total |
42062207 |
| Single-end alignments with a unique best hit |
30164086 |
| Sequences without alignments under any condition |
3447260 |
| Sequences that did not map uniquely |
8450861 |
| Genomic sequence context not extractable (edges of chromosomes) |
11 |
Cytosine Methylation
| Total C's analysed |
272510191 |
| Methylated C's in CpG context |
6058625 |
| Methylated C's in CHG context |
378396 |
| Methylated C's in CHH context |
883462 |
| Methylated C's in Unknown context |
5 |
| Unmethylated C's in CpG context |
5533683 |
| Unmethylated C's in CHG context |
59077001 |
| Unmethylated C's in CHH context |
200579024 |
| Unmethylated C's in Unknown context |
33 |
| Percentage methylation (CpG context) |
52.3% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
15316287 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
14847788 |
original bottom strand |
Deduplication
| Alignments analysed |
30164075 |
| Unique alignments |
28103809 |
| Duplicates removed |
2060266 |
| Duplicated alignments were found at 887454 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
255792659 |
| Methylated C's in CpG context |
4991396 |
| Methylated C's in CHG context |
352303 |
| Methylated C's in CHH context |
814044 |
| Unmethylated C's in CpG context |
4837283 |
| Unmethylated C's in CHG context |
55438894 |
| Unmethylated C's in CHH context |
189358739 |
| Percentage methylation (CpG context) |
50.8% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.4% |
M-Bias Plot
