Alignment
| Sequences analysed in total |
41838389 |
| Single-end alignments with a unique best hit |
30254168 |
| Sequences without alignments under any condition |
3263888 |
| Sequences that did not map uniquely |
8320333 |
| Genomic sequence context not extractable (edges of chromosomes) |
6 |
Cytosine Methylation
| Total C's analysed |
273912876 |
| Methylated C's in CpG context |
2646309 |
| Methylated C's in CHG context |
188393 |
| Methylated C's in CHH context |
546529 |
| Methylated C's in Unknown context |
2 |
| Unmethylated C's in CpG context |
8828062 |
| Unmethylated C's in CHG context |
59384428 |
| Unmethylated C's in CHH context |
202319155 |
| Unmethylated C's in Unknown context |
54 |
| Percentage methylation (CpG context) |
23.1% |
| Percentage methylation (CHG context) |
0.3% |
| Percentage methylation (CHH context) |
0.3% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
15335181 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
14918981 |
original bottom strand |
Deduplication
| Alignments analysed |
30254162 |
| Unique alignments |
28012477 |
| Duplicates removed |
2241685 |
| Duplicated alignments were found at 1159965 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
255399048 |
| Methylated C's in CpG context |
1870614 |
| Methylated C's in CHG context |
172704 |
| Methylated C's in CHH context |
501495 |
| Unmethylated C's in CpG context |
7887387 |
| Unmethylated C's in CHG context |
55352879 |
| Unmethylated C's in CHH context |
189613969 |
| Percentage methylation (CpG context) |
19.2% |
| Percentage methylation (CHG context) |
0.3% |
| Percentage methylation (CHH context) |
0.3% |
M-Bias Plot
