Alignment
| Sequences analysed in total |
37721665 |
| Single-end alignments with a unique best hit |
27212362 |
| Sequences without alignments under any condition |
3072169 |
| Sequences that did not map uniquely |
7437134 |
| Genomic sequence context not extractable (edges of chromosomes) |
9 |
Cytosine Methylation
| Total C's analysed |
247843938 |
| Methylated C's in CpG context |
1269468 |
| Methylated C's in CHG context |
169864 |
| Methylated C's in CHH context |
496313 |
| Methylated C's in Unknown context |
2 |
| Unmethylated C's in CpG context |
9257661 |
| Unmethylated C's in CHG context |
53972426 |
| Unmethylated C's in CHH context |
182678206 |
| Unmethylated C's in Unknown context |
51 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.3% |
| Percentage methylation (CHH context) |
0.3% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
13811121 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
13401232 |
original bottom strand |
Deduplication
| Alignments analysed |
27212353 |
| Unique alignments |
25416352 |
| Duplicates removed |
1796001 |
| Duplicated alignments were found at 785583 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
233196766 |
| Methylated C's in CpG context |
760133 |
| Methylated C's in CHG context |
157183 |
| Methylated C's in CHH context |
460054 |
| Unmethylated C's in CpG context |
8236045 |
| Unmethylated C's in CHG context |
50773221 |
| Unmethylated C's in CHH context |
172810130 |
| Percentage methylation (CpG context) |
8.4% |
| Percentage methylation (CHG context) |
0.3% |
| Percentage methylation (CHH context) |
0.3% |
M-Bias Plot
