Alignment
| Sequences analysed in total |
19955435 |
| Single-end alignments with a unique best hit |
14017231 |
| Sequences without alignments under any condition |
2094098 |
| Sequences that did not map uniquely |
3844106 |
| Genomic sequence context not extractable (edges of chromosomes) |
10 |
Cytosine Methylation
| Total C's analysed |
124189561 |
| Methylated C's in CpG context |
802253 |
| Methylated C's in CHG context |
1088930 |
| Methylated C's in CHH context |
3662255 |
| Methylated C's in Unknown context |
1 |
| Unmethylated C's in CpG context |
4409090 |
| Unmethylated C's in CHG context |
25850368 |
| Unmethylated C's in CHH context |
88376665 |
| Unmethylated C's in Unknown context |
19 |
| Percentage methylation (CpG context) |
15.4% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
4.0% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
7102131 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
6915090 |
original bottom strand |
Deduplication
| Alignments analysed |
14017221 |
| Unique alignments |
11076867 |
| Duplicates removed |
2940354 |
| Duplicated alignments were found at 2049674 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
98710682 |
| Methylated C's in CpG context |
448934 |
| Methylated C's in CHG context |
864771 |
| Methylated C's in CHH context |
2915484 |
| Unmethylated C's in CpG context |
3334225 |
| Unmethylated C's in CHG context |
20587566 |
| Unmethylated C's in CHH context |
70559702 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
4.0% |
M-Bias Plot
