Alignment
| Sequences analysed in total |
34586566 |
| Single-end alignments with a unique best hit |
24755018 |
| Sequences without alignments under any condition |
2733306 |
| Sequences that did not map uniquely |
7098242 |
| Genomic sequence context not extractable (edges of chromosomes) |
14 |
Cytosine Methylation
| Total C's analysed |
231857749 |
| Methylated C's in CpG context |
7825117 |
| Methylated C's in CHG context |
252148 |
| Methylated C's in CHH context |
916950 |
| Methylated C's in Unknown context |
54 |
| Unmethylated C's in CpG context |
2784835 |
| Unmethylated C's in CHG context |
50674586 |
| Unmethylated C's in CHH context |
169404113 |
| Unmethylated C's in Unknown context |
2130 |
| Percentage methylation (CpG context) |
73.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
12363743 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
12391261 |
original bottom strand |
Deduplication
| Alignments analysed |
24755004 |
| Unique alignments |
24013535 |
| Duplicates removed |
741469 |
| Duplicated alignments were found at 644553 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
225255839 |
| Methylated C's in CpG context |
7583723 |
| Methylated C's in CHG context |
245274 |
| Methylated C's in CHH context |
892749 |
| Unmethylated C's in CpG context |
2642133 |
| Unmethylated C's in CHG context |
49268303 |
| Unmethylated C's in CHH context |
164623657 |
| Percentage methylation (CpG context) |
74.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
M-Bias Plot
