Alignment
| Sequences analysed in total |
49710954 |
| Single-end alignments with a unique best hit |
35647531 |
| Sequences without alignments under any condition |
3811248 |
| Sequences that did not map uniquely |
10252175 |
| Genomic sequence context not extractable (edges of chromosomes) |
18 |
Cytosine Methylation
| Total C's analysed |
330358805 |
| Methylated C's in CpG context |
11627481 |
| Methylated C's in CHG context |
1865533 |
| Methylated C's in CHH context |
6492945 |
| Methylated C's in Unknown context |
164 |
| Unmethylated C's in CpG context |
3379248 |
| Unmethylated C's in CHG context |
70102242 |
| Unmethylated C's in CHH context |
236891356 |
| Unmethylated C's in Unknown context |
3029 |
| Percentage methylation (CpG context) |
77.5% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
2.7% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
17798554 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
17848959 |
original bottom strand |
Deduplication
| Alignments analysed |
35647513 |
| Unique alignments |
33355926 |
| Duplicates removed |
2291587 |
| Duplicated alignments were found at 2015798 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
309813301 |
| Methylated C's in CpG context |
10868393 |
| Methylated C's in CHG context |
1745344 |
| Methylated C's in CHH context |
6076463 |
| Unmethylated C's in CpG context |
3064912 |
| Unmethylated C's in CHG context |
65808583 |
| Unmethylated C's in CHH context |
222249606 |
| Percentage methylation (CpG context) |
78.0% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
2.7% |
M-Bias Plot
