Alignment
| Sequences analysed in total |
33496333 |
| Single-end alignments with a unique best hit |
23695359 |
| Sequences without alignments under any condition |
2893253 |
| Sequences that did not map uniquely |
6907721 |
| Genomic sequence context not extractable (edges of chromosomes) |
17 |
Cytosine Methylation
| Total C's analysed |
212736033 |
| Methylated C's in CpG context |
7422868 |
| Methylated C's in CHG context |
1460258 |
| Methylated C's in CHH context |
4970886 |
| Methylated C's in Unknown context |
118 |
| Unmethylated C's in CpG context |
2277342 |
| Unmethylated C's in CHG context |
44893994 |
| Unmethylated C's in CHH context |
151710685 |
| Unmethylated C's in Unknown context |
1955 |
| Percentage methylation (CpG context) |
76.5% |
| Percentage methylation (CHG context) |
3.2% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
11812605 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
11882737 |
original bottom strand |
Deduplication
| Alignments analysed |
23695342 |
| Unique alignments |
20913238 |
| Duplicates removed |
2782104 |
| Duplicated alignments were found at 2381384 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
188523118 |
| Methylated C's in CpG context |
6559543 |
| Methylated C's in CHG context |
1281081 |
| Methylated C's in CHH context |
4357074 |
| Unmethylated C's in CpG context |
1938347 |
| Unmethylated C's in CHG context |
39840409 |
| Unmethylated C's in CHH context |
134546664 |
| Percentage methylation (CpG context) |
77.2% |
| Percentage methylation (CHG context) |
3.1% |
| Percentage methylation (CHH context) |
3.1% |
M-Bias Plot
