Alignment
| Sequences analysed in total |
32152792 |
| Single-end alignments with a unique best hit |
22956194 |
| Sequences without alignments under any condition |
2594644 |
| Sequences that did not map uniquely |
6601954 |
| Genomic sequence context not extractable (edges of chromosomes) |
26 |
Cytosine Methylation
| Total C's analysed |
213576928 |
| Methylated C's in CpG context |
7400887 |
| Methylated C's in CHG context |
329151 |
| Methylated C's in CHH context |
1279594 |
| Methylated C's in Unknown context |
58 |
| Unmethylated C's in CpG context |
2367053 |
| Unmethylated C's in CHG context |
46348119 |
| Unmethylated C's in CHH context |
155852124 |
| Unmethylated C's in Unknown context |
1953 |
| Percentage methylation (CpG context) |
75.8% |
| Percentage methylation (CHG context) |
0.7% |
| Percentage methylation (CHH context) |
0.8% |
| Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
| OT |
11456216 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
11499952 |
original bottom strand |
Deduplication
| Alignments analysed |
22956168 |
| Unique alignments |
20994285 |
| Duplicates removed |
1961883 |
| Duplicated alignments were found at 1727893 different positions |
Cytosine Methylation after Extraction
| Total C's analysed |
195788196 |
| Methylated C's in CpG context |
6773758 |
| Methylated C's in CHG context |
302543 |
| Methylated C's in CHH context |
1177348 |
| Unmethylated C's in CpG context |
2092735 |
| Unmethylated C's in CHG context |
42532370 |
| Unmethylated C's in CHH context |
142909442 |
| Percentage methylation (CpG context) |
76.4% |
| Percentage methylation (CHG context) |
0.7% |
| Percentage methylation (CHH context) |
0.8% |
M-Bias Plot
