FastQCFastQC Report
Fri 29 Apr 2016
test1.fq

Summary

[OK]Basic Statistics

MeasureValue
Filenametest1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25
Sequences flagged as poor quality0
Sequence length150
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NAGGAGGCCAAAGCTTCAGCGAAGACTGCAAAAGCAGTCATAGCCAGACA14.0No Hit
NTCGACAGCATTTATTAGCTTTCTACCATGTAGTATAAACCATGGCACAC14.0No Hit
NTCCCATCCTGGTCCTTATCGATTCTCCGGAAGAAATCCATCACTCTCGA14.0No Hit
NCCATGTGTTGGCCTCCTGGCTAGGGCCTGTAAGTTTCATTTCACTTTGG14.0No Hit
NTTTGAATAGGTATGGCCCCCTTAGACTCATGTGTTTGAATGCTTGGCCC14.0No Hit
NTTACCTCCAACTCCACAGGAATAGAATCAAATCGGTAGTCCTAATTTTA14.0No Hit
NCCATATTTAGTTTCCCCTTTAAAAAAAGGCTCACCTTCAAAGACCAGTG14.0No Hit
NATGCCCTCTCCTTTCAGTCCTGGCAATGCCACTGGAATCTTAGACTTCC14.0No Hit
NGGGACAGAACGGGAAGGACCACGCGCCAGCTGGTGGGGGGTCTGCGGTA14.0No Hit
NCAGAGAGTAAGGTGCCTATTATAGGAAGAAAATATAATCTTATTACACC14.0No Hit
NGGATGATAGAGGGGTTCGATCAGGAAAATGTTGCTATAACAATGAATAA14.0No Hit
NCCGTGGGAGGGGCGGCCCGGCCCCCGCGACCGCCCCCCTGTCCGCCACC14.0No Hit
NTTAACTATTTCTACTATTCTCATTGTGGGCCAAAAAAAATACAATGAAA14.0No Hit
NTCTCAGTCTGGCTTGTGAAGCTATGGACCATGAGGGCAGATGGGATCAG14.0No Hit
NCGAACATCTCTTTTCTCTTTTGCAGTAAAAAAGCAGCATGGGTACAAAA14.0No Hit
NACACAAGAACCCAGCACAGTCTGGTGCTGCTCTCCATCGCACTGCTTGG14.0No Hit
NTTAGTGATGTTGAACAGGACAGGAGACCTGTCACCAGCCCTGACACTTG14.0No Hit
NTCTGATGCTTTGTGTCCACACTCACGTCAGTTTGTACCTCACTGATTTT14.0No Hit
NTTTTATATAAGTTGAACTAGTAAATTAAAGCTCCATAGGGTCTTCTCGT14.0No Hit
NTCTAGAAAGGTCTAGAACACCATGTTGTTGCAGGATATTTGATCACACT14.0No Hit
NACCGAATTCCTTCTACGAAGCCACAATTACTCTTATACCTAAACCACAC14.0No Hit
NTGATGGTAAGCTTAAAGTTGAACTGAAATTCTTTTTTGGGCAACCAGCT14.0No Hit
NGATGTGGTCCACAGCCTTCAGGACACCTTTGCCTAAGTAACGCTGTTTG14.0No Hit
NCCAGACTAATAATTTTAATGATTTCCTTAAATGCCACATACCAGATATA14.0No Hit
NAAGTATGTATGTTGAGCTTGAACGCTTTCTTTATTGATGGCTGCTTTTA14.0No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers