Basic Statistics
Measure | Value |
---|---|
Filename | SLX-12161.L2V18DRBC03.HFFYTBBXX.s_6.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39270800 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT | 173939 | 0.442921967466922 | No Hit |
GCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCC | 161699 | 0.41175377124988544 | No Hit |
CCCGTTCTCTGGGAACTCACCTCCCCGAAGCTCAGGGAGAGCCCTGTTAG | 124702 | 0.31754382390987707 | No Hit |
CTCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGG | 82104 | 0.20907137109506302 | No Hit |
CCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCG | 69886 | 0.17795919614573677 | No Hit |
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT | 60361 | 0.15370453364841052 | No Hit |
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT | 54734 | 0.1393758212208562 | No Hit |
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC | 54585 | 0.13899640445318148 | No Hit |
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG | 52026 | 0.13248011244996283 | No Hit |
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT | 49521 | 0.1261013271947605 | No Hit |
CCGTTCTCTGGGAACTCACCTCCCCGAAGCTCAGGGAGAGCCCTGTTAGG | 48798 | 0.12426026462409728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCGTTC | 32300 | 0.0 | 63.03339 | 1 |
CCGTTCT | 39275 | 0.0 | 52.65132 | 2 |
GTCAAAC | 53470 | 0.0 | 50.05057 | 7 |
CAGTCAA | 56360 | 0.0 | 47.02409 | 5 |
CCCCAGT | 59050 | 0.0 | 45.066425 | 2 |
CCCAGTC | 61720 | 0.0 | 43.034264 | 3 |
GGAGTCT | 66405 | 0.0 | 42.231678 | 3 |
GAGTCTT | 66195 | 0.0 | 42.09373 | 4 |
AGTCTTG | 69545 | 0.0 | 40.31397 | 5 |
CCAGTCA | 67630 | 0.0 | 39.316204 | 4 |
AGTCAAA | 69345 | 0.0 | 38.405712 | 6 |
TGGAGTC | 74065 | 0.0 | 38.195312 | 2 |
GCCCCAG | 69575 | 0.0 | 37.97158 | 1 |
GTCTTGG | 76500 | 0.0 | 37.383026 | 6 |
CAAACTC | 75840 | 0.0 | 35.857113 | 9 |
CTTGGAA | 79305 | 0.0 | 35.806595 | 8 |
ACGTTCG | 8085 | 0.0 | 34.730515 | 6 |
TCTTGGA | 87775 | 0.0 | 32.507225 | 7 |
CTGGAGT | 102075 | 0.0 | 30.285875 | 1 |
TCAAACT | 90900 | 0.0 | 29.963955 | 8 |